BIOINFORMATICS
Wahlmodul 2: Bioinformatik (7,5 ECTS-AP, 5 SSt) [VO 2 104540] [UE 3 104541]
LECTURER
Francesca Finotello, Hubert Hackl, Dietmar Rieder
LOCATION
HSB5/Rechnerraum 19
UNITS
| Mo 15 May | [09:00-12:00] [13:00-16:00] | Lecture | HSB5 | Hubert Hackl |
| Tu 16 May | [09:00-12:00] [13:00-16:00] | Lecture | rr19 | Hubert Hackl |
| We 17 May | [09:00-12:00] [13:00-16:00] | Lecture | rr19 | Francesca Finotello |
| Fr 19 May | [09:00-12:00] [13:00-16:00] | Computer Lab | rr19 | Francesca Finotello |
| Mo 22 May | [09:00-12:00] [13:00-15:00] | Lecture Seminar/Presentations | HSB5 HSB5 | Francesca Finotello FF, HH, DR |
| Tu 23 May | [09:00-12:00] [13:00-16:00] | Computer Lab Computer Lab | rr19 rr19 | Hubert Hackl Dietmar Rieder |
| We 24 May | [09:00-12:00] [13:00-16:00] | Computer Lab | rr19 | Dietmar Rieder |
| Th 25 May | [09:00-12:00] [13:00-15:00] | Computer Lab Written Exam | rr19 rr19 | Dietmar Rieder Hubert Hackl |
NOTES
| I Transcriptional regulation, Sequence analyses, Gene expression analyses | [pdf] | |
| II Functional analyses (pathways, enrichment, networks), Single cell analyses (scRNAseq) | [zip] | |
| Exercises - Computer Lab | Link |
SEMINAR TOPICS
BOOKS
 Bioinformatics. Sequence and Genome Analysis. D.W. Mount · CSHL Press. 2004 |
 Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins Baxevanis AD, Ouellette BF (eds) · John Wiley & Sons, New York, 1998 |
 Biological sequence analysis: Probabilistic models of proteins and nucleic acids Durbin, Eddy, Krogh, Mitchison · Cambridge University Press. 2000 |
 Computational Methods in Molecular Biology Salzberg, Searls, Kasif · Elsevier. 1998 |
DATA
| EXPR.txt |
| limma.R |
| COUNTS.txt |
| TARGET.txt |
| DESEQ2.R |
