BIOINFORMATICS
Wahlmodul 2: Bioinformatik (7,5 ECTS-AP, 5 SSt) [VO 2 104540] [UE 3 104541]
LECTURER
Francesca Finotello, Hubert Hackl, Dietmar Rieder
LOCATION
Rechnerraum 19
UNITS
| Mo June 2 | [09:00-12:00] [13:00-16:00] | Lecture | rr19 | Hubert Hackl |
| Tu June 3 | [09:00-12:00] [13:00-16:00] | Lecture | rr18 | Hubert Hackl |
| We June 4 | [09:00-12:00] [13:00-16:00] | Lecture | rr26 | Francesca Finotello |
| Th June 5 | [09:00-12:00] [13:00-16:00] | Lecture | rr19 | Francesca Finotello |
| Fr June 6 | [13:00-16:00] | Seminar/Presentations | rr19 | FF, DR, HH |
| Tu 10 June | [09:00-12:00] | Computer Lab | rr15 | Hubert Hackl |
| [13:00-16:00] | Computer Lab | rr15 | Dietmar Rieder | |
| We 11 June | [09:00-12:00][13:00-16:00] | Computer Lab | rr26 | Dietmar Rieder |
| Th 12 June | [09:00-12:00][13:00-16:00] | Computer Lab | rr19 | Francesca Finotello |
| Fr 13 June | [09:00-12:00] | Computer Lab | rr19 | Dietmar Rieder |
| [13:00-15:00] | Written Exam | rr19 | Hubert Hackl |
NOTES
| PART I: I Transcriptional regulation, II Sequence analyses, III Gene expression analyses | [pdf] | |
| PART II: IV Functional analyses, V Single cell analyses (Francesca Finotello) | [zip] | |
| Exercises - Computer Lab | Link |
SEMINAR TOPICS
| ScSimilarity | [zip] |
| Tumor immune archetypes | [zip] |
| Phenotype of single cell RNAseq subpopultaions (Scissor) | [zip] |
| Neoantigen prediction | [zip] |
| ChIP-seq in myogenesis | [zip] |
| Pathway responsive genes for activity inference (PROGENy) | [zip] |
DATA
| EXPR.txt |
| limma.R |
| COUNTS.txt |
| TARGET.txt |
| DESEQ2.R |
