subject0 HNSC ../samples/rnaseq/rnaseq_subject0_1.fastq ../samples/rnaseq/rnaseq_subject0_2.fastq ../samples/mutations/subject0_mut.vcf.gz subject1 HNSC ../samples/rnaseq/rnaseq_subject1.fastq None ../samples/mutations/subject1_mut.txt.gz subject2 BRCA ../samples/rnaseq/rnaseq_subject2_1.fastq None ../samples/mutations/subject2_mut0.vcf ../samples/mutations/subject2_mut1.vcf ../samples/mutations/subject2_mut2.vcf