Downloads

Release Date Description Instructions Download
2.0 21.08.2013 SIMPLEX Server - Virtual Machine User Manual download
1.0 08.02.2012 SIMPLEX Server - Virtual Machine User Manual download
1.0 08.02.2012 SIMPLEX Client Jar File User Manual download
1.0 08.02.2012 Java 6 Supporting Libraries Documentation download

Test data

Description Download
Illumina test data testdata_R1.fq.gz
testdata_R2.fq.gz
SOLiD SE test data solid_se.zip
SOLiD PE test data solid_pe.zip
CCDS CCDS.20110907.bed
CCDS.20110907.test.bed

Source code

The following repositories need to be checked out for working on SIMPLEX:

Name Description URL
CommonBioCommands Commands that are used in different pipelines and places svnsimplex/CommonBioCommands
CommonBioJava Common Java classes for bio analyses svnsimplex/CommonBioJava
TranscriptomePipeline The actual pipeline svnsimplex/TranscriptomePipeline
JClusterService Web framework for submitting jobs to a cluster svnsimplex/JClusterService