| Release | Date | Description | Instructions | Download |
| 1.3.0 | 15.06.2022 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.2.1b | 08.04.2019 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.2.1a | 29.01.2019 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.2.1 | 25.05.2018 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.2.0 | 29.09.2016 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.1.2 | 07.07.2016 23.06.2016 |
meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.1.1b | 29.02.2016 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.1.1a | 12.01.2016 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.1.1 | 11.01.2016 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.1.0 | 17.08.2015 | meRanTK ZIP package including quick-test data |
User Manual | download |
| 1.0.1 | 01.04.2015 | meRanTK ZIP package including quick-test data |
deprecated | deprecated |
| 1.0.0 | 17.02.2015 | meRanTK ZIP package including quick-test data |
deprecated | deprecated |
| BSseq reads | |
| Description | Download |
| Simulated RNA-BSseq (clean filtered) single-end reads |
sim_rnaBSseq_se.fastq.gz |
| Simulated RNA-BSseq (raw unfiltered) single-end reads |
sim_rnaBSseq_raw_se.fastq.gz |
| Simulated RNA-BSseq (clean filtered) paired-end reads |
sim_rnaBSseq_pe_fwd.fastq.gz sim_rnaBSseq_pe_rev.fastq.gz |
| Simulated RNA-BSseq (raw unfiltered) paired-end reads |
sim_rnaBSseq_raw_pe_fwd.fastq.gz sim_rnaBSseq_raw_pe_rev.fastq.gz |
| real RNA-BSseq (clean filtered) single-end reads (truncated 2M) |
rnaBSseq_se.fastq.gz |
| real RNA-BSseq (clean filtered) paired-end reads (truncated 1M) |
rnaBSseq_pe_fwd.fastq.gz rnaBSseq_pe_rev.fastq.gz |
| Khoddamin & Cairns 2013 RNA-BSseq (raw, needs to be quality filtered) reads from GEO |
wt-MEFs-Large-RNA-BS |
| reference / annotation / spilcing information for meRanG | |
| Description | Download |
| General Feature Format (GFF3) mm10 w/o predictions |
Refseq_mm10.gff3.gz Refseq_mm10_sort.gff3.gz |
| mm10 genome sequence |
mm10 Fasta files at UCSC |
| reference transcriptome data for meRanT | |
| Description | Download |
| mm10 transcripts fasta (refSeq w/o predictions 20140418) |
mm10.refSeqRNA-noPRED.20140418.fa.gz |
| mm10 transcripts to gene map file (refSeq w/o predictions 20140418) |
mm10.refSeqRNA-noPRED.20140418.GeneName.map.gz |
| mm10 tRNAs fasta |
mm10.tRNAs.20140204.fa.gz |
| mm10 transcript to tRNA map file (20140204) |
mm10.tRNA.20140204.map.gz |
| m5C sites from simulated RNA-BSseq | |
| Description | Download |
| m5C sites from simulated RNA-BSseq single-end data. C is methylated if non-conversion ratio >= 0.2 and read coverage >= 10 |
sim_rnaBSseq_se_m5Cs.txt |
| m5C sites from simulated RNA-BSseq paired-end data. C is methylated if non-conversion ratio >= 0.2 and read coverage >= 10 |
sim_rnaBSseq_pe_m5Cs.txt |