Downloads

Release Date Description Instructions Download
1.2.1b 08.04.2019 meRanTK ZIP package
including quick-test data
User Manual download
1.2.1a 29.01.2019 meRanTK ZIP package
including quick-test data
User Manual download
1.2.1 25.05.2018 meRanTK ZIP package
including quick-test data
User Manual download
1.2.0 29.09.2016 meRanTK ZIP package
including quick-test data
User Manual download
1.1.2 07.07.2016
23.06.2016
meRanTK ZIP package
including quick-test data
User Manual download
1.1.1b 29.02.2016 meRanTK ZIP package
including quick-test data
User Manual download
1.1.1a 12.01.2016 meRanTK ZIP package
including quick-test data
User Manual download
1.1.1 11.01.2016 meRanTK ZIP package
including quick-test data
User Manual download
1.1.0 17.08.2015 meRanTK ZIP package
including quick-test data
User Manual download
1.0.1 01.04.2015 meRanTK ZIP package
including quick-test data
deprecated deprecated
1.0.0 17.02.2015 meRanTK ZIP package
including quick-test data
deprecated deprecated

Mus musculus test data

BSseq reads
Description Download
Simulated RNA-BSseq (clean filtered) single-end reads sim_rnaBSseq_se.fastq.gz
Simulated RNA-BSseq (raw unfiltered) single-end reads sim_rnaBSseq_raw_se.fastq.gz
Simulated RNA-BSseq (clean filtered) paired-end reads sim_rnaBSseq_pe_fwd.fastq.gz
sim_rnaBSseq_pe_rev.fastq.gz
Simulated RNA-BSseq (raw unfiltered) paired-end reads sim_rnaBSseq_raw_pe_fwd.fastq.gz
sim_rnaBSseq_raw_pe_rev.fastq.gz
real RNA-BSseq (clean filtered) single-end reads (truncated 2M) rnaBSseq_se.fastq.gz
real RNA-BSseq (clean filtered) paired-end reads (truncated 1M) rnaBSseq_pe_fwd.fastq.gz
rnaBSseq_pe_rev.fastq.gz
Khoddamin & Cairns 2013 RNA-BSseq (raw, needs to be quality filtered) reads from GEO wt-MEFs-Large-RNA-BS
reference / annotation / spilcing information for meRanG
Description Download
General Feature Format (GFF3) mm10 w/o predictions Refseq_mm10.gff3.gz
Refseq_mm10_sort.gff3.gz
mm10 genome sequence mm10 Fasta files at UCSC
reference transcriptome data for meRanT
Description Download
mm10 transcripts fasta (refSeq w/o predictions 20140418) mm10.refSeqRNA-noPRED.20140418.fa.gz
mm10 transcripts to gene map file (refSeq w/o predictions 20140418) mm10.refSeqRNA-noPRED.20140418.GeneName.map.gz
mm10 tRNAs fasta mm10.tRNAs.20140204.fa.gz
mm10 transcript to tRNA map file (20140204) mm10.tRNA.20140204.map.gz
m5C sites from simulated RNA-BSseq
Description Download
m5C sites from simulated RNA-BSseq single-end data. C is methylated if non-conversion ratio >= 0.2 and read coverage >= 10 sim_rnaBSseq_se_m5Cs.txt
m5C sites from simulated RNA-BSseq paired-end data. C is methylated if non-conversion ratio >= 0.2 and read coverage >= 10 sim_rnaBSseq_pe_m5Cs.txt