Downloads

Release Date Description Instructions Download
1.2.8 17.05.2013 GPViz ZIP package incl. test data User Manual download
1.2.8 17.05.2013 GPViz Webstart (1GB RAM) User Manual download
1.2.7 17.04.2013 GPViz ZIP package incl. test data User Manual download
1.2.6 27.03.2013 GPViz ZIP package incl. test data User Manual download

Homo sapiens test data

Description Download
General Transfer Format (GTF) file Refseq_hg19.gtf
Ensembl_GRCh37.gtf
Protein domains Refseq_CDD.txt
Ensembl_IPR.txt
Uniprot_PFAM.txt
Genomic regions Exons.bed
Genomic variants Somatic_mutations.maf
Annotation files Human_Refseq.txt
Human_Ensembl.txt

Mus musculus test data

Description Download
General Transfer Format (GTF) file Refseq_mm10.gtf
Ensembl_GRCm38.gtf
Protein domains Mouse_Refseq_CDD.txt
Mouse_Ensembl_IPR.txt
Mouse_Uniprot_PFAM.txt
Genomic regions Mouse_Exons.bed
Genomic variants Mouse_mutations.mut
Annotation files Mouse_Refseq.txt
Mouse_Ensembl.txt

Sources and links

Description Link
Gene models and exon positions (GTF) ENSEMBL database
UCSC Table browser
refGene, refFlat
CBCB iGenomes
Domains NCBI Batch CD search tool
ENSEMBL translation, protein features, interpro, analysis, xref
PFAM
Annotation ENSEMBL Mart
NCBI gene2refseq, gene_info
UniProt