GPViz is a versatile Java-based software for dynamic gene-centered visualization of genomic regions and/or variants. User defined data can be loaded in common formats as resulting from analysis workflows used in sequencing applications and studied in the context of the gene, the corresponding transcript isoforms, proteins and their domains or other protein features. Both the genomic regions and variants can be also defined interactively.
Various gene filter options are provided to enable an intersection of variants, genomic regions, and affected protein features. Display options and link outs allow the user to adapt the visualization to individual needs and applications. Finally, it is possible to save publication ready high resolution images in various formats for each individual selected gene or for a batch of genes.
Snajder R, Trajanoski Z, Hackl H. GPViz: dynamic visualization of genomic regions and variants affecting protein domains.
Bioinformatics. 2013. 29:2195-2196 | PMID:23782613